Multiscale Modeling of Living Matter Group
Permanent Members
PhD students and Post-docs
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Recent Publications
2010
Chromatin fiber dynamics under tension
and torsion.
Lavelle C, Victor JM, Zlatanova J.
Int J Mol Sci. 2010 Apr
12;11(4):1557-79.PMID: 20480035
Transcription within condensed
chromatin: Steric hindrance facilitates elongation.
Becavin C, Barbi M, Victor JM, Lesne
A.
Biophys J. 2010 Mar
3;98(5):824-33.PMID: 20197036
2009
Molecular crowding affects diffusion
and binding of nuclear proteins in heterochromatin and reveals the
fractal organization of chromatin.
Bancaud A, Huet S, Daigle N,
Mozziconacci J, Beaudouin J, Ellenberg J.
EMBO J. 2009 Dec 16;28(24):3785-98.
Epub .PMID: 19927119
A molecular model of chromatin
organisation and transcription: how a multi-RNA polymerase II machine
transcribes and remodels the beta-globin locus during development.
Wong H, Winn PJ, Mozziconacci J.
Bioessays. 2009
Dec;31(12):1357-66.PMID: 19877003
How are nucleosomes disrupted during
transcription elongation?
Zlatanova J, Victor JM.
HFSP J. 2009 Dec;3(6):373-8. Epub 2009
Nov 12.PMID: 20514129
Right-handed nucleosome: myth or
reality?
Lavelle C, Recouvreux P, Wong H,
Bancaud A, Viovy JL, Prunell A, Victor JM.
Cell. 2009 Dec 24;139(7):1216-7; author
reply 1217-8. No abstract available. PMID: 20064364
Nonspecific DNA-protein interaction:
why proteins can diffuse along DNA.
Dahirel V, Paillusson F, Jardat M,
Barbi M, Victor JM.
Phys Rev Lett. 2009 Jun
5;102(22):228101. Epub 2009 Jun 2.PMID: 19658903
The nucleosome family: dynamic and
growing.
Zlatanova J, Bishop TC, Victor JM,
Jackson V, van Holde K.
Structure. 2009 Feb 13;17(2):160-71.
Review.PMID: 19217387
Interplay between Topology and Dynamics
in Excitation Patterns on Hierarchical Graphs.
Hutt MT, Lesne A.
Front Neuroinformatics. 2009;3:28. Epub
2009 Sep 15.PMID: 19826610
Systems biology: the multiscale
organization of living systems
Lesne A.
Med Sci (Paris). 2009
Jun-Jul;25(6-7):585-7. Review. French. PMID: 19602355
Entropy estimation of very short
symbolic sequences.
Lesne A, Blanc JL, Pezard L.
Phys Rev E Stat Nonlin Soft Matter
Phys. 2009 Apr;79(4 Pt 2):046208. Epub 2009 Apr 7.PMID: 19518313
AER1, a major gene conferring
resistance to Aphanomyces euteiches in Medicago truncatula.
Pilet-Nayel ML, Prosperi JM, Hamon C,
Lesne A, Lecointe R, Le Goff I, Herve M, Deniot G, Delalande M,
Huguet T, Jacquet C, Baranger A.
Phytopathology. 2009
Feb;99(2):203-8.PMID: 19159312
Sequence-driven telomeric chromatin
structure.
Revaud D, Mozziconacci J, Sabatier L,
Desmaze C, Lavelle C.
Cell Cycle. 2009 Apr 1;8(7):1099-100.
Epub 2009 Apr 4.PMID: 19270515
2008
Tubulin dimers oligomerize before their
incorporation into microtubules.
Mozziconacci J, Sandblad L, Wachsmuth
M, Brunner D, Karsenti E.
PLoS One. 2008;3(11):e3821. Epub 2008
Nov 27.PMID: 19043587
Behavioral sequence analysis reveals a
novel role for beta2* nicotinic receptors in exploration.
Maubourguet N, Lesne A, Changeux JP,
Maskos U, Faure P.
PLoS Comput Biol. 2008
Nov;4(11):e1000229. Epub 2008 Nov 21.PMID: 19023420
Robustness: confronting lessons from
physics and biology.
Lesne A.
Biol Rev Camb Philos Soc. 2008
Nov;83(4):509-32. Epub 2008 Sep 24. Review.PMID: 18823391
Feature context-dependency and
complexity-reduction in probability landscapes for integrative
genomics.
Lesne A, Benecke A.
Theor Biol Med Model. 2008 Sep
10;5:21.PMID: 18783599
Cellular automata approach of
transmembrane ionic currents.
Pezard L, Lesne A.
J Integr Neurosci. 2008
Jun;7(2):271-86.PMID: 18763724
2007
An all-atom model of the chromatin
fiber containing linker histones reveals a versatile structure tuned
by the nucleosomal repeat length.
Wong H, Victor JM, Mozziconacci J.
PLoS One. 2007 Sep 12;2(9):e877.PMID:
17849006
Nucleosome chiral transition under
positive torsional stress in single chromatin fibers.
Bancaud A, Wagner G, Conde E Silva N,
Lavelle C, Wong H, Mozziconacci J, Barbi M, Sivolob A, Le Cam E,
Mouawad L, Viovy JL, Victor JM, Prunell A.
Mol Cell. 2007 Jul 6;27(1):135-47.PMID:
17612496
Dynamics of emotional expression in
autobiographic speech of patients with anorexia nervosa.
Doba K, Pezard L, Lesne A, Vignau J,
Christophe V, Nandrino JL.
Psychol Rep. 2007
Aug;101(1):237-49.PMID: 17958131 [
2006
Structural plasticity of single
chromatin fibers revealed by torsional manipulation.
Bancaud A, Conde e Silva N, Barbi M,
Wagner G, Allemand JF, Mozziconacci J, Lavelle C, Croquette V, Victor
JM, Prunell A, Viovy JL.
Nat Struct Mol Biol. 2006
May;13(5):444-50. Epub 2006 Apr 16.PMID: 16622406
A physical model for the condensation
and decondensation of eukaryotic chromosomes.
Mozziconacci J, Lavelle C, Barbi M,
Lesne A, Victor JM.
FEBS Lett. 2006 Jan 23;580(2):368-72.
Epub 2005 Dec 27.PMID: 16387302
Autobiographical memory deficit in
anorexia nervosa: emotion regulation and effect of duration of
illness.
Nandrino JL, Doba K, Lesne A,
Christophe V, Pezard L.
J Psychosom Res. 2006
Oct;61(4):537-43.PMID: 17011363
SAGA interacting factors confine
sub-diffusion of transcribed genes to the nuclear envelope.
Cabal GG, Genovesio A,
Rodriguez-Navarro S, Zimmer C, Gadal O, Lesne A, Buc H,
Feuerbach-Fournier F, Olivo-Marin JC, Hurt EC, Nehrbass U.
Nature. 2006 Jun
8;441(7094):770-3.PMID: 16760982
Chromatin fiber functional
organization: some plausible models.
Lesne A, Victor JM.
Eur Phys J E Soft Matter. 2006
Mar;19(3):279-90. Epub 2006 Feb 23.PMID: 16501875
The chromatin regulatory code: beyond a
histone code.
Lesne A.
Eur Phys J E Soft Matter. 2006
Mar;19(3):375-7. Epub 2006 Feb 10.PMID: 16470338
